Display summaries for vegtable objects.
Those methods are implemented for objects of the classes vegtable, coverconvert and shaker.
The method for class vegtable
retrieves the metadata, the size of
the object, its validity and additional statistics on the content of input
object.
For objects of class shaker, the function summary()
will either
retrieve general statistics when companion
is missing, or a more detailed
display when accompained by a taxlist or vegtable object.
Usage
# S4 method for vegtable
summary(object, units = "Kb", ...)
# S4 method for coverconvert
summary(object, ...)
# S4 method for shaker
summary(object, companion, authority = FALSE, ...)
# S4 method for vegtable
show(object)
# S4 method for vegtable
print(x, ...)
# S4 method for coverconvert
show(object)
# S4 method for coverconvert
print(x, ...)
# S4 method for shaker
show(object)
# S4 method for shaker
print(x, ...)
Author
Miguel Alvarez kamapu78@gmail.com
Examples
## Summary for 'vegtable' objects
summary(Wetlands_veg)
#> ## Metadata
#> db_name: Sweadataveg
#> sp_list: Easplist
#> dictionary: Swea
#> object size: 350.6 Kb
#> validity: TRUE
#>
#> ## Content
#> number of plots: 100
#> plots with records: 100
#> variables in header: 24
#> number of relations: 3
#>
#> ## Taxonomic List
#> taxon names: 417
#> taxon concepts: 96
#> validity: TRUE
#>
## Summary for 'coverconvert' objects
summary(braun_blanquet)
#> ## Number of cover scales: 3
#>
#> * scale 'br_bl':
#> Levels Range
#> 1 r 0 - 1
#> 2 + 0 - 1
#> 3 1 1 - 5
#> 4 2 5 - 25
#> 5 3 25 - 50
#> 6 4 50 - 75
#> 7 5 75 - 100
#>
#> * scale 'b_bbds':
#> Levels Range
#> 1 r 0 - 1
#> 2 + 0 - 1
#> 3 1 1 - 5
#> 4 2m 1 - 5
#> 5 2a 5 - 15
#> 6 2b 15 - 25
#> 7 3 25 - 50
#> 8 4 50 - 75
#> 9 5 75 - 100
#>
#> * scale 'ordin.':
#> Levels Range
#> 1 1 0 - 1
#> 2 2 0 - 1
#> 3 3 1 - 5
#> 4 4 1 - 5
#> 5 5 5 - 15
#> 6 6 15 - 25
#> 7 7 25 - 50
#> 8 8 50 - 75
#> 9 9 75 - 100
#>
## Summary for 'shaker' objects (alone and with companion)
summary(Wetlands, Wetlands_veg)
#> ## Species groups:
#> * 'Cyperus papyrus' group:
#> Cyperus papyrus
#> Cyclosorus interruptus
#> Lepistemon owariense
#> * 'Cyperus latifolius' group:
#> Cyperus latifolius
#> Ludwigia abyssinica
#> Lythrum rotundifolium
#> * 'Centrostachys aquatica' group:
#> Centrostachys aquatica
#> Coldenia procumbens
#> Heliotropium indicum
#> Persicaria senegalensis
#> * 'Pistia stratiotes' group:
#> Pistia stratiotes
#> Eichhornia crassipes
#> Azolla pinnata ssp. africana
#> * 'Azolla nilotica' group:
#> Azolla nilotica
#> Lemna aequinoctialis
#> * 'Ammannia prieuriana' group:
#> Ammannia prieuriana
#> Ethulia conyzoides
#> Leersia hexandra
#>
#> ## Formulas:
#> * HY1: groups:'Centrostachys aquatica'
#> * HY2: species:'Nymphaea lotus > 25'
#> * HE1: groups:'Cyperus papyrus' | species:'Cyperus papyrus > 50'
#> * HE2: species:'Typha domingensis > 25'
#> * HE3: species:'Cyperus exaltatus > 50'
#> * HE4: groups:'Cyperus latifolius'
#> * HE5: species:'Phragmites australis > 50'
#> * HE6: species:'Panicum subalbidum > 50'
#> * HE7: groups:'Ammannia prieuriana'
#>